PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 156aa    MW: 17771 Da    PI: 4.6709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.3e-1148130695
                     ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
              B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                     t+  v  +  ++lp+k  +e   gg         + +   ++W++ + y++++    +++ Wk+Fv++n+Lk+gD +vF+l+  + s+ +++v+
  XP_016515131.1  48 TKTTVKPHYGMYLPRKMNKELpaGGA------PAVLTCGRKKWDMFY-YSNNK----FSAEWKKFVDDNDLKVGDGLVFELSeCStSKIHFRVQ 130
                     55666677778888888777754333......34556788****999.77777....8999*******************98433344445555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-1239133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-1539133IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.3243135IPR003340B3 DNA binding domain
CDDcd100171.04E-1446133No hitNo description
PfamPF023623.4E-847129IPR003340B3 DNA binding domain
SMARTSM010197.3E-547135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MESKPSFVHV SNHEDYSTPE RESTGIEEID NGEYWPLSGK PYVDMILTKT TVKPHYGMYL  60
PRKMNKELPA GGAPAVLTCG RKKWDMFYYS NNKFSAEWKK FVDDNDLKVG DGLVFELSEC  120
STSKIHFRVQ ILRGDFPSEL LPEDEEGATD ANPIEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630412.11e-114PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_016515131.11e-114PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLM0ZNK45e-77M0ZNK4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000045232e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-07B3 family protein